NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10000647

Scaffold Ga0210400_10000647


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10000647 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37379
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (72.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000530Metagenome / Metatranscriptome1047Y
F056784Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000064726F056784N/AMPPMWRTAGYAAALVGLTLMIAAAAQNDTPAFAKFKSEMMPKVGQKITVVGTLHDGKQGFWLAFNNWGAYIYAANKSGIEKENSLYAQFRRGQTVKVTGTLRHFAEPPATKKEEQHPGSVQRPPEHFFFDAAEVEMSVDIQGH
Ga0210400_1000064733F000530GAGVAEIKPTESPATPTAPVERPFRVKLRGSVLVLVRLPNKRAVRAAIHQLSTSGGVIHLEKPLDEKLDVEMIFHISKATIRSKAQMLFPMWATQGWMQPFRFVDLPQNSREILDAKLKTFLGETAKGAAAGA
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