NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10001433

Scaffold Ga0210400_10001433


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10001433 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23753
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010881Metagenome / Metatranscriptome298Y
F044760Metagenome / Metatranscriptome154Y
F046669Metagenome / Metatranscriptome151Y
F048521Metagenome / Metatranscriptome148Y
F059416Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000143310F044760GGALINEPKNESPSVPAQPCQGSAAKAQKVRSSRYEWEGKSSNENEKVAGASGASRRSLLASARALLKKFFAGNRGPGNRGFFDNDDDASPSAA
Ga0210400_1000143321F048521AGGAGMFDGKNNHILDSFSFRLALTAAVFAAWSCAGYVLLYLA
Ga0210400_1000143324F046669GGAGGMADLKSFNANPIVNSSTKRARMIGGAATAAATAVLALMVVLDFNGCSKANKNAQVSPSNQNVSGPNTASPTVATSQPVEQLEKKVEAVIEKKKAIKRASTATYKNSTYGISFRYPKTYTMLTPEKDSKDSAWPDPVAMNFAEPGGETLTTLVLPGTRASSYFKTSVNKGVTAEQCSKFATTPETTEAATEAATNPPVDADDDSIVPKKANILGVEFAKAESVTEQSEARYYHHFENGACYEFALGVEDAPGTTKPVDHLQVFDKLERIMTTVKIKSDPVPVVAASDPAAQPAPTSNPQQ
Ga0210400_1000143325F010881GAGGMVRFECESCGRLKGDGEAWILGFAAQNIGVTSSRREISIASSWDRPRAVEALAVHFCSDECRATYMNALFGDSPETLDGSTTTAKRRIKRVVPGAVVDTVVSEKARPKATRRTVVRRKTA
Ga0210400_1000143327F059416GAGGMTHTESANQNQIHQSLVPMLRVWTRSIGWTVLLSALLAVLFALAVDGCAGIR
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