NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10003936

Scaffold Ga0210400_10003936


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10003936 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13013
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038896Metagenome / Metatranscriptome165N
F079073Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000393613F079073AGGAGGMYKLEYDDDGCLMMVKIEEVCLFSPKAIDGVIARLRSLRDKAWHDWPADRHNRKALEVVIRNGGVKGLFAAGALEMEAPQHQPAASIHKPQRRRRGRLAVVTGGRAS
Ga0210400_1000393614F038896GGAGGMAEVALNDEQQDVVRRYVAVWRRWRQGIRGFADLEDHMEQRHAVLVDGIAVDNRPGRPVIAGDAKDGKFHAAIFGNDDGAIPDMTADELAQARRYILHGQGGVPIRKWRELKLVPRTRITDRHDEPPPTLPPAA
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