NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10004006

Scaffold Ga0210400_10004006


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10004006 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12888
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071727Metagenome / Metatranscriptome122Y
F079075Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_100040061F079075N/AMLRSILLKFSESKSFAHWVTTNATTRRMSHRFVAGESLEE
Ga0210400_1000400614F071727N/AMRRSPVTAISALFLSWVLAWPTLPAQDPQSPNAKRDAQRSLVKPDPKHAKKLLEQAAKEEAAGDYVRALSDYEEAARYSPFDVTIVGKGVALRSRLLREHLDGAERMAVEGNLDGAAQQLAAALELDPGNPAILERLQQIGSMKESPTGERRAEPAEGLPQIAPDKTTKSFNLQTDVKSAYEQVAQAFGLKASFDPDLQARNARLQ
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