NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10004505

Scaffold Ga0210400_10004505


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10004505 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12057
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004899Metagenome / Metatranscriptome419Y
F006203Metagenome / Metatranscriptome379Y
F012137Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000450510F004899GGAGMLRIEFHDAANTVTMRLEGRFVGPFAKDARELVTRCKIPPRLVVNLSEVTFVDAVGEEVLTWLGRIGGEFVAENCYPLHVCERLHLPLARKRVEALPQAM
Ga0210400_1000450513F012137GAGMFRISTIDTRSQRTLLLEGTLIGSWVGELRTTWRSACQELGGRRLVVDVSNLTVISLEGEHAILDLMNEGAKFSRGGILTRHVLKQLARKKQQESPRR
Ga0210400_100045052F006203GGAGGMLESGVELLGDLLLSALTLLIGSCIVGSIVAAILAVTVKGAGTKN
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