NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10019040

Scaffold Ga0210400_10019040


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10019040 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5376
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002750Metagenome / Metatranscriptome533Y
F058741Metagenome / Metatranscriptome134Y
F086235Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_100190402F086235GGAGMNSKLRFASGVSVLFTTLAFGHVMIKDTQGMMSHHDEGQLFIVVHTIVAIALGVLSLTGAFSLLATRRRQNSN
Ga0210400_100190408F002750N/AMFDHLKRLLRSRYVDLLEGEVARLRAENRALTNSLLGTAGFPPVDYPEPVKPQPLSRLRKRSWHQIQAWREVDAARDSVSRGDKA
Ga0210400_100190409F058741GAGMDLYPTTETWTGTPGAIAPADGNAARAVAPASLPAGDAHSLDDSARQQDALRGSGQAGATNTMDLGSNNERLEELKPKLVHALRELVRQYREEGVVARRHEIRRIRQARLFWQGLQYAWWNPNDMNWHLPFEQRFSDD
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