NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10024564

Scaffold Ga0210400_10024564


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10024564 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4682
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F002750Metagenome / Metatranscriptome533Y
F051385Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_100245643F000739GGAGMMTRVEIWLKGLLAAAISGAAGGVLTGLAAVGIDPQHFNLQAGIGATFRIGAAAALINAVIGVAAYLQKSPLPEEGK
Ga0210400_100245644F051385GAGGMYGYNWMRIACGLALLFSSVMVVAQSMLKNDMANHLYYGTSLIAVFGYLFLTSRNKEEERDSPWWW
Ga0210400_100245646F000512N/AMIQVLRETHDTPESVAHSLELAGGINRFREPNYRAVWGWNRLAWIGGKFEERDPDTGSLLREVVELRLEPKYPALNRWHIEKWLPPETYGSPRAWWAQTIEVEGGRSIPALGPYPARGEYEHCFTLEGLRGEFVQLTATVAEHIARAIEWSRRHPRSAGKRALYDREQRRERAYDAWAYDLLDDAVPAFHRQPFVAVA
Ga0210400_100245647F002750GGALRDFVKQLLRGRYVAMLEEEVARLRAENRALTNSLLGTAGFPPVEYPEPVKPQALPRLRKRSWHQIQAWKAAEAASNELTK
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