NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10064749

Scaffold Ga0210400_10064749


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10064749 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2854
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003851Metagenome / Metatranscriptome465Y
F026325Metagenome / Metatranscriptome198Y
F067465Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_100647496F026325GAGGMMTDPAFAIKHEVHQLVDRQIETLRQSSGLTTSDLSNYRERSQKITTLYRELDRMRRANFGRPLPRAS
Ga0210400_100647497F003851GGAMKRRNLAPADFRTIDERAKRVVRALKDARHGRVNANDPIMEQLRQCPEAFKVGEILGKAFDALKYAQDGGEIGDRYLPPAGVVLPPLV
Ga0210400_100647498F067465N/AVIGLPLDVTLPRIGGIRWRYCTRWDEGPAAILGMSLLRLGICRPNDWSGSAVDFVEHGFRRFCSQNRAADVKRVWVGD
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