NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10000002

Scaffold Ga0210405_10000002


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000002 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)488435
Total Scaffold Genes432 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)223 (51.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005690Metagenome393Y
F017938Metagenome238Y
F019196Metagenome231Y
F019884Metagenome227Y
F058467Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_10000002168F017938AGGMSDQDDFSLRRRSKMIGFIVAEASAIGLLFLAGTFAVSSWLTNSTLAVSVDIVTIVAAVAVAIIPIAFFAVTPILPRRR
Ga0210405_10000002343F005690GAGGMKCYDFCPAVSSTLKSKIRYNGQEYSSPAELPPEVRIAYEKALHDGTVKRKFVFNGEQFANEDTMPADVRKLCDDVMGVIENNGEVTIPNGKPEPLLTKREIVVVGLFAGGIIALVLARLVMG
Ga0210405_10000002361F019884GGAGGMVTVFCLRSLPKTQDGFAISELIVSTSIFCSISLGLLMGFTSLERNYVATSDFSINHADEMRISDYMALDLRRAVSVQAAKNDTTIYIPAYYDQTSNPQTPALDGQGGVFYGASGSSVKVHYYLMAGTIYRQQDNAPALPLAVNVQDFTFDVTDAGKVVTTQITFNPTFNSGGASAAATTATAFYNTTLLRNSRTDIQSSVY
Ga0210405_10000002362F019196N/AMRRHLTTEQTAFTLIECTIATAISALFLGSLFLLNSSAMDTIQMAREAACASQVLQQRIEAMRIANWHQVTDANWLLTNLLNTDAPGANQLTNLSETLTLVPYGSSTVGNTQLTRASGAVTIVANNSALLGENAIKIIWTVNYTAAPDRIISRQIVAILAKGGVAKW
Ga0210405_10000002417F058467N/AMKPTPQISQNRQTGFPLMDYNFQATGDPKSGCSKKSPPFHKLSSEFFGEESYRDYVTNFLVFSVLGLITAWPIMSMVVAVTRLLQNS
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