NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10000021

Scaffold Ga0210405_10000021


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000021 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)198614
Total Scaffold Genes169 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)138 (81.66%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001511Metagenome / Metatranscriptome680Y
F002201Metagenome / Metatranscriptome584Y
F011102Metagenome / Metatranscriptome295Y
F042194Metagenome / Metatranscriptome158Y
F075775Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_10000021105F042194AGGAGGMGFSAVVLESDPKLAQSLAYGLSSHFNSVHLTRSRDELREQVAGNRPEVVILDMEYSRLTDVSNLHHDFPSLPIVCTYRVPDEELWIAALEAGASDVCPSDDVQNVLDSALRSMAVAQSFAA
Ga0210405_10000021134F075775AGGAGGVAKRSLLLLPIVLGSAFAGAQVLGQVSGPSEPDLKDAFVRSPLTCSQPKTIVVPEKVAARAKLKARLLSLLRESLFDDAAGIVNIAREKEIKKLANRLRSNRTD
Ga0210405_1000002155F002201AGGGGGMWLNEVAPERLAELFHHYHQALMPDTSGKGSEGNGSWKEVPQQEKSRLVAAACLALLELDSMTNDRAKSRQYFAQPGEAEWGC
Ga0210405_1000002191F011102GGAGGLHEWRNLVCGMMIVVLPASLTAQSSGGAMLHSDGGVWLNGNPAPNSSAIFPHDVVQTQKENKAKIDAEGSTATVQSDTIVQFEADELVLDHGSLQVNTSRGMRVRVNCMIVIPLTQDWTRYDVIDVDGKMTVVAHEHDVKIHYQGAGARRAKTAGFSDVTVHQGEQATREERCGAAARPAEVVNANGAILNSVWAKGAGLTAIGVLTCWALCRGDDPISPSKP
Ga0210405_1000002192F001511AGGAGGVDFVMFEDVDGMEVFVNPKRVIWVREYPGQTTVISCGDEDKFAVRLTPAQTVAALGKSVR
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