NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10286620

Scaffold Ga0210405_10286620


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10286620 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010363Metagenome / Metatranscriptome305Y
F021618Metagenome / Metatranscriptome218Y
F046028Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_102866202F046028AGGAGGVQSVTPAPHVDDSQHLRERAAKMRASSKELKDNNTAAIIRRLAELYDRLADRAEARSNGVVLLGNCDRAG
Ga0210405_102866203F010363AGGAGMSFEDELRRVEEHVAEARRMVHRQKGLIIRFGAAGVSTWDAQRILWLLESNLRRLEEHRDRLRANFTVQQGE
Ga0210405_102866204F021618AGGMSNQTSEGFAYIERQYRDVKGRIELQRRVVEQLHIIEADASQAEASLNALMDDEASKLRILDYLRRWLGHKVEKT
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