NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10411817

Scaffold Ga0210405_10411817


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10411817 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1064
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028021Metagenome / Metatranscriptome193Y
F087813Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_104118172F028021GGAGVTDDERMALIHAELDGDLTSQQRVDLARLLLADPRVRALRDELRGLCSRLDAVGQVEPPPQLKDSILNRLPSVPVATAYHRASFGRWRLAAMVAGLLTAGTIVYETVQGPAPGSRETAGTMAAGAPTTVDSVAVGNGPVTGRATLYRDKSGLAVGLDVSAAEPVDVLISTGGHSFRINGLGSSDPAGSTRQAVALPGVRMQGQDIELSFLIGERTVSRATLRAPSAP
Ga0210405_104118173F087813GGAGMSGKTVWVVGGLVLAIGTVGYLSYHETPSGKDAAGTI
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