NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10053214

Scaffold Ga0210408_10053214


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10053214 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3164
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002143Metagenome / Metatranscriptome590Y
F025584Metagenome / Metatranscriptome201Y
F035065Metagenome / Metatranscriptome173Y
F048436Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_100532141F048436N/ARHRMSSLKRWRRVGQGQFHKWERAGEEFEGTWRGAHDGRYGPLGSLETSEGLITFPLPAALLDRLQRVGEGTEVLIQYTGLQTSKAGRSFKGFEVYVAGDAALAEPVQPAGLSPQAESLVSDGDPKEV
Ga0210408_100532143F002143N/AMAHTPDPNEAIQRFLGQWSPLTRAEALHLALQSLRDRVEPDRVLACELAWEVHAKGYWSQVRNADGTTYPTEEDYFRHMLGLASWRTAYKRLAIGRMLTRFEEPERSLLRSSLAAVGLAKATVGAPAIERFEEWRTWLQCASELSTVLLQAKVSEALDALPRGREPAPPGERFRRDVLSAMPDIEAMELVERFFHLGKRVVGSPNPIAIFLAGCRECLPEWELQAAKPRGSAAASTSSVCPHGQNSA
Ga0210408_100532145F025584GGAGVGDARLGEPRRWGVVWIHHEAEELRVHHRATIPAADARAVVVALLASGRVPPLQATLFDIDCVTGRPILHRFWGTAYRRDDTVYLILFINERCLVLALSG
Ga0210408_100532146F035065GGAGGMTNREVEAISDFLRHFGSFGCRQISVRRTEPKPRTPEDVGRVVLASLAAWRAEGLEAERLYKVATIAIHFEAYKLPGPICMPACCRPWGEVDPACPPGPGRPLTGAQLQQALLRAVPIGPPPAPDAPLPDDLDEDLKRTGL
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