NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10090394

Scaffold Ga0210408_10090394


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10090394 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2402
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049907Metagenome146Y
F074486Metagenome119Y
F076461Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_100903942F076461AGGMNDTHQTPLQEAISFLTIGAILVGVGCYLAATHNIPVASPALFWVASMVYHWFPELHALRAPQIPMLVSAAAVGGAFFVVGIPFAGLLAMWFSSAHMASLERQTEKLRRNRMRIQKRQRDRDGYEAN
Ga0210408_100903943F049907N/AMSENGQTDRPVPPELSVMLDLYADEGDRDAIRRAYFGLAHGDPSTFAVQFSVLLTAHTQALKAYQRSDLDIQKAQVDVSRLIAAVDKLTARCAHVSEIIAIVESLTRKRLRWALTIAFSAGVLIIPVLDVLIGSLRGLLHW
Ga0210408_100903945F074486AGGAMKSGKAISVKTPVNQEKPKAYRSPLWAHLDEIHKWRMAQQTWEAISDKLFAQYGIKVSLQCVQAFFQRAARRGFRRPLGFGRERSGSIAAETAVTVAQGPESVYEEARKAIRIEQQSRPKIIRADRPL
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