NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10372516

Scaffold Ga0210408_10372516


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10372516 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1138
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000739Metagenome / Metatranscriptome913Y
F001367Metagenome / Metatranscriptome713Y
F070523Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_103725161F000739N/AMNLTRIEIWLKGLIAAAISGGAGGVLTGLAAVGIDPQHFNLQSGIGATLRIAAAAALINAVIGVAAYLQKSPLPTE
Ga0210408_103725162F070523AGGAVKSDKVSLSPDERAAIHAKLGSILKGGDQAEILLVIILLLALRPPSQRKAQKKKRQP
Ga0210408_103725163F001367GAGGMPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNSGGGGFVQDDALLVVTAVTQPDTSLQVSITDATAPPNQLPTDLLVPLKIWERP
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