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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021180 Open in IMG/M |
| Scaffold ID | Ga0210396_10000010 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 509016 |
| Total Scaffold Genes | 408 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 323 (79.17%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000323 | Metagenome / Metatranscriptome | 1300 | Y |
| F000439 | Metagenome / Metatranscriptome | 1137 | Y |
| F000737 | Metagenome / Metatranscriptome | 914 | Y |
| F000840 | Metagenome / Metatranscriptome | 866 | Y |
| F001920 | Metagenome / Metatranscriptome | 617 | Y |
| F002860 | Metagenome / Metatranscriptome | 525 | Y |
| F009977 | Metagenome / Metatranscriptome | 310 | Y |
| F044181 | Metagenome / Metatranscriptome | 155 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210396_10000010134 | F001920 | GGAGG | VLNWRGPLLAAGIFAAVFAVLLTMAHQNESKTSDMGSSLREDPYGARLLFDSYARAGYQVKRGQDEDSLSDQDASRTTAFFIGGYSPKGWTTNDGTLQAGEKLRGRLEDFLARGGRVVLVEPRWELKSQSQSWEVGTKWERVAQEHTPPWVSPDLRAMPADSEMMYLAADGASLQTDAQWTVLYSGTAGANAQADTSARVYMAMRRAGNGELIAASQESFLLNEAIKMHPNPVLLDFLAGGRPVIWVDETLHGLRQDEGVLWLVQRYRLQTALLLFWATLLALLWSMSGDLVRRPACDPGAQIVRHGEVAGVAARRLLQRSIAKERVVTECWEQFRRCSPQNAQAISADPHWGARLRTALARPPLAGYKELSQLIAERRAFAMRLAHVGRDAPDNSTLDR |
| Ga0210396_10000010196 | F002860 | GAGG | MIMPTPSEPKPEQNSSQAAEQVASAHRILKELQKTLGNHPELGEAITKLEMALATLAVKTGGLL |
| Ga0210396_10000010340 | F000840 | AGGA | MISLEEKIARTERLLHRLEEDQPYLHARLSPLGAEYRQSATAFADRVRAEAEAELQRLRAQRAEPYEGNVLHSAD |
| Ga0210396_1000001035 | F000323 | AGGAGG | MIRLFFVFLLLINFLVAQQTATDTPGQQNSKSFNGETKVEGCVSKSAGDFILMKHDPGMSYQLHATGKIHLSHYLGQQVEVIGKESPSMSTSSSSSARLGSPSVALTITSIKTIEKRCSA |
| Ga0210396_10000010359 | F000737 | N/A | MPSIASTQKGQRGSRVKLGGSILALVLLENGRQIRGRMSQLSVNGGLLSLENPLDESIRVTVVFHLGITSVRCRAQMLFPMWATQGCLQPFRFIELPEHSRVALNRELEALMRSGATQELEEAE |
| Ga0210396_10000010371 | F044181 | AGGA | MSAGAPLLFGLELAGPYMFLLAAVVGGGVAWGLIELNNIVRHAATLIAIAGIVMLVPPVSAATVAAQPKALAFGGLGIIVRVIVAWYLSRQEVAEAFHPSG |
| Ga0210396_10000010397 | F009977 | GGAGG | MNPTQWFSQHSISFTFILAYVPLIATVVTTAVSLILVRATLRYTEASDRSLALAREQFEREWAPELHLKLERVSARETKVSATNLAKISVLMQMLQLRKLSMAVPSLRCFLNEPLVGGTTWSDDLGKRFFACTGEDYAGQIAVSITFYAAGRMYRTDWFRFQVQVRDGQLLKLDPVNISARRVRALETQKGASMRRELVRDVVGSARERDEDAATAISRKR |
| Ga0210396_1000001098 | F000439 | AGGAGG | MEVVKGTGAGSELIHAQASSISAQQVVKAAHEELLQLMRQRAEIMKRIGTVKQTIAGLADIFGDQVLDDDLLELIDRKPNGRQPGFTKACRRVLMEVRRPVGAREVCLELERNAPAILARHKDPLASVTTVLNRLVDYGEARSLSNDRGRRVWEWVSEVEAPEVMTARRTA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |