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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021180 Open in IMG/M |
| Scaffold ID | Ga0210396_10000012 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 505934 |
| Total Scaffold Genes | 469 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 276 (58.85%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000548 | Metagenome / Metatranscriptome | 1036 | Y |
| F001289 | Metagenome / Metatranscriptome | 730 | Y |
| F001412 | Metagenome / Metatranscriptome | 701 | Y |
| F008094 | Metagenome / Metatranscriptome | 339 | Y |
| F028922 | Metagenome / Metatranscriptome | 190 | Y |
| F062016 | Metagenome / Metatranscriptome | 131 | Y |
| F102977 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210396_100000121 | F102977 | N/A | MRAWQIFCVGVAVLVAVLLLPSYESVLAGLAAVVMVAAVVAGFLFRPRKDVFYLRTTLVVSEPDYPLAVEHDRVAVRVELVRLWLLFLPTFAAIAFLIVTSASGTTWRFSVLDRLLNVTTMSYPILYGIRVFLAIVVGLLWTWVSERWVLRDVDACSADSVSPTAGLLLYSFRDRSGDYYGGEAFPFALVRSPKLARIVFYNVSNPQRNRIAMGCLFHRPVIAGRGLTDLDESTVATHSVGVQPASESL |
| Ga0210396_1000001218 | F001289 | GAGG | MKNPYDVLRMKEQELIRVRKEMDALRLAARLLDAEDTAKGQGQPKLSRVVEMP |
| Ga0210396_10000012199 | F000548 | N/A | MAKVISSGPRWIGIPARVLAMTFLFTLLSFAVALLVSILGTVVYSQVKHVAPNLTFAYRHIAFPFAITAGGIVLALSLGMEIRNYRQRKALDGIERVS |
| Ga0210396_10000012236 | F028922 | AGGTGG | MSPLVPRLILKNFLFVVSCTLLVCVATPLALAQHAVVRSAGGVARPSAPPISHAPISSAPSIHAPISTPRISVAPSVGAFGMARFHPPRHPIRPFPPVLFLYESPFLFGGPFWGLNSCWAACDFWSWTLGTTTVSYAGPANYVSEVYEIPVPVYGEERPDLPQLFLKDGTILNVTDYWLVDDQLHFTMIEANGTTAVEHVIPFDALDLQTTVDANTRRGFRFMLRNEPVEQYLRDHPEGPPPVVTPRG |
| Ga0210396_10000012237 | F008094 | AGGAGG | MGTAARVFESKLRFRYFAAPLFCFSSVLIFSPSVLAQTNPPPGDPHEMVTRQPRTLTKPAERSAALDLLGRARQNFNLHDISSPYALKVSFETNGAAQMEGEWTMEELSDGAAHWRWSVQAGDSQLIRIGADGRVYGTDPAEPVPMRVQLVRSALHWPIMRNASAAAIRAADVERDGKSMTCLLTSASIPPNPAPRSWVEREYCVDPATGRLQMWSEAPGIYAVYDYSGATAFHGHTLPREITIFEDGRPAVQVRVENAEDAPDLDPNLFKPSPEMGSADESFTLASPNRFPMRVDPSDGPTSPFFQPVIVHAILDAQDGHVLDAETLQNSDRDLSRAALDVVSGGSFPPSGFQQEVFINVQFHMPAARMDGPPIFHSSVGWVILDHGRRIPPVRRPPPHPGK |
| Ga0210396_10000012283 | F062016 | GGAG | MKNFCKLATVMLITTMLMMTVLALSAFAQEPSPAIALANLTEGQGTLASTGGQSWDGLSEFVLIPGASLMGATSTTTALYIGFTGGSEADIGNMVLYETPRNGSTVLKVTKLTLGAISDPSINLTSTSVCPVQPVSATNPCIIRLDTVKLALSPLDDYYFTIYFTLDTNNEKISGLGQATSPGALSGWFLYGDQTRIGVKGALPTNENSDAAPYFLAYVTNQ |
| Ga0210396_10000012378 | F001412 | N/A | MPGQKPGESKEHMKLTNLAKTVVLGLAVLLASSAFASNKGTLVVGESFEVNGQQLKPGEYQVRWDGTGSTVEVSFLMNNKAVAKTSAKVVAVDKAYGADSAILDHSNGKATISELRFAGKKFALEIGPTEKAEMSGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |