NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000015

Scaffold Ga0210396_10000015


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000015 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)438688
Total Scaffold Genes465 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)380 (81.72%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062934Metagenome / Metatranscriptome130N
F063880Metagenome / Metatranscriptome129N
F070350Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_10000015233F062934GGAGGVRTRTPAGGIASKELKQKLKNGKFKKRPARRAIVLKSASWYANAALSIGISARAESRTH
Ga0210396_10000015424F063880GAGMGEYADRVRADIVSDNRARRILYLVYGALAVAAVCLLGGFATVVLVLGLGPVLLLIVVIEIYSRLQNWRRLRAAEEADADLGKARPEKSNEALPGNVIRKLRGRAQQAQAAGEPYLAADLRLAATTIERLDREA
Ga0210396_10000015451F070350GAGMPLPSLYVSGDKPCEWSVTRATVYGAALGAVAGLFKTLIYAHQHVAISVAEIAGAVLGFALLCAGVTALRNVIARRLIWPDLH
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