NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000029

Scaffold Ga0210396_10000029


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000029 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)326307
Total Scaffold Genes309 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)241 (77.99%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000036Metagenome / Metatranscriptome4352Y
F001950Metagenome / Metatranscriptome613Y
F003395Metagenome / Metatranscriptome489Y
F014165Metagenome / Metatranscriptome265Y
F014895Metagenome / Metatranscriptome259Y
F018035Metagenome / Metatranscriptome237Y
F026320Metagenome / Metatranscriptome198Y
F027251Metagenome / Metatranscriptome195N

Sequences

Protein IDFamilyRBSSequence
Ga0210396_10000029134F000036GAGGMTTKESFWMACDSIEQLRAEYGPFQTRAEAEAEARKLGFGFLLRYEHVIDANENIQEVRCIFIELPMAHSTPTGPVVRRLHTRCATCGETSVHEEHWQAEVWADIHEFEHIRHRVRLFEQTRREGLKEIGDWRDQCA
Ga0210396_10000029197F027251GGAGMRLHFHLRRHTTDGAIEVNPQSWFRLQHEAHDAAQAANSSRSEDDLFFDVIECTSDACERRRTPRKPSDAYWYSA
Ga0210396_10000029249F003395AGTAGGMANPTSGGVTASTEMLAAKRHAGVHTPVIVGKMIIANQPMAYAA
Ga0210396_10000029271F018035GGAGMKKTIAIAIAVLVIALILNASPARGSANPFVQGIVIEVQKQKVYFPDYAIGGSNPSDAPLTSRYYAYRVSVRVDCKTYIGRYETPFNYLPSEFTPNQPIQMRLTKHVMYFDLPNDPDMRMGIVRRSSDCGQTR
Ga0210396_1000002928F014165AGGAMAVAKLKRPKEDQFEELADRIATEINERATRMTPEERARADSETKKIADRVQHRTP
Ga0210396_10000029281F001950AGGAGMQMGWKYSLRRHFTFVRRLLFSSALMLLSVACLFGQTDESQATQHAGAGKVMVHTKFGGQIFGFDIDQNGTEGLLSEAKTLANGNILAAVETFDQKTGKILKVVDKLESQDDFVTMGIVGSSVGLVEREHVEGGFVVKRIFHTLNPLELNKFNGLWTPPIGSKHIIMPTGVSRSQGVAKVAVFDYDNSGNFIPLVFSSNVAANTFGPVVKITDSNNFGSVSPPIAYDSKTNVAVLGGGNGCFGCLPVIGVVDLVKGTFSEFTGIGFGFINGIAIDSADGIACTTTEDDASVEFYDLKKQTGFTVVLPNSGEQQFFSGADVEFDSLHKLFFIAQPNSSSSSSGSTIYVYDTKGNLKETLNGFNFSNTFNVIPAHIALHPTVRGGYVDGPDSGVTELQSFSY
Ga0210396_1000002929F026320N/AVKKRDDLDDVIREESSRGKKRPVDTEAVNQQAERRNAVLRILRRGTREDLRALLKVWGYSTQEVEAALKEYDAALDQRSS
Ga0210396_1000002932F014895N/AMKLCSVLLLVTVLVPNLLAAEKPYLTGKILDVEQKKTTRVLYYQVDTPITKDEPYYEVSVQVKDTIYVGDYSPRHASATLPDEWNVPQTEVRVRLDKHYMFLTRPAGTEVQFVIIKRMAAAPAQNSSEPPSPKK
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