NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000031

Scaffold Ga0210396_10000031


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000031 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)324913
Total Scaffold Genes306 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)227 (74.18%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001348Metagenome / Metatranscriptome717Y
F007888Metagenome / Metatranscriptome343Y
F008167Metagenome / Metatranscriptome338Y
F009287Metagenome / Metatranscriptome320Y
F012246Metagenome / Metatranscriptome282Y
F013105Metagenome / Metatranscriptome274Y
F013661Metagenome / Metatranscriptome269Y
F013941Metagenome / Metatranscriptome267Y
F044614Metagenome / Metatranscriptome154Y
F071614Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_1000003114F007888GAGMVTLVSTLRRGLQTKIVTRRTIKDGPDMNSGAKSIAAERRSTRIRAQIPFRLASLDPAVPFSEHCHTLVVNTEGCGVRLSQPLEPGLAVLLDELPGGTSAPARVANCVPLGTEGKYWLVGIALEEPANIWCIQPAPANWGIDPKPAATAVPLPKKENEWPYSVFSTKGEAHPGRK
Ga0210396_10000031140F008167N/AMVMVVSRDLSAKPRWHLIPVRVLLVTFLLTLLCFAVSLLLGILGVVIAARLRGLHPNMSIAYRYIALPTAATASVVVLISTSVMEIRRYRQAKALAEIERISA
Ga0210396_10000031148F044614AGAAGMPRRLIIATIRVPIVALLGAVIFAPISNAQMRGSGFGRGVNVSFNGRLHSHSFGSGAIFLGDPFYADYPVAPLTIPPQYLVVQPTPAIDTAPEVKSEPLMIELQGNRYVRYGGKQQLAERGVNPPPDYAAADAGKSSAQAQPELPPTVLIFRDGHREQVPAYAIVGSTLYADGDYWQSGHWMKNIELSALNIPATVQANHDNGVKFLLPSAPNEVITRP
Ga0210396_10000031159F013105N/AMGIRGFRHSCIFLLMVLAGVLHAQSPTSSSSTKSKPRSEPSQISAPDPGSIANGLYHNSFFGFDYKLHFGWVDRTAGMREDSNDDSNDPKKSILLLAAFEHPPEVAADTVNSAVVVAAEAVSSYPGLQNAEQYFGPLAELTKSKGFTVVNEPYEFRVGAAQLVRGDFSKPLGSLTMHQSTLVIIEKGFVVSFTFIAGSEDEVDLLIEGLSFGRKETPAAHK
Ga0210396_10000031170F013941N/AMQWRRSYREELAKLRKAVPTLLATVFLCCAFGSAQVAPYADGGIGVNGLSFQSPYYFGDVGVDWGDRAPIFVEGEAGADTANPTGLNNGTTFRAAGVVMGRVTQHWRLGGGFHFSELFTSQYDNHSVWPTAGAMFEQDWFRLNAQYLIPTTTDYTLNGPLFDMRMHLKQRFYLRERVGIYSYHNPNGVSPSHHVSAIADFGVLYVFR
Ga0210396_1000003120F071614AGGGGGMFSKKFLVSVVFLLIAATTIAVAQNDLAVRSNGTMIWGKHAKMTLAAESSPTRTTTNLKDFGLVTIFDNLAAKYPKGQYWCCSGYNVMGPSQGEQWMAAAFTPAADHTVTTIEVAVGYSQGKTNGVVLSLNSDNNGVPGKALKTWNTSGLPRFGTCCTLVVKSDSAGIPVSAGKQYWVVLSTNGHELDTVDAWNVIDTDQVDSATVATYPGTSNKWETFQTTPGLGFAVKGSN
Ga0210396_10000031217F009287GAGMRNILTVIVTVLLLGCNGSPPPAGFVNQTQHSEAELDAIWTEAQQSVAQKIDLNPLQRLSSNVPPDTLPGDPRAWSVEPHRLLVKAVPDVSSADLFSATGEHRSDPTGMIACPQPCNVRYTTAYSSYRPELTKYAASWEFAGNNFNVILEYEFENQILNALGYPMTWR
Ga0210396_10000031275F001348GGAGMLVTEEQKVLQLVAMQLMNGEVVALEGQEVRVKRVGSGRLRMVQFRLNGRMFEAIEQNREKPSRWGQLAREKHQVVQFRDLATHQYVAVAVDGEITQYGRGGS
Ga0210396_10000031299F013661GGAGMPQETLQEILSIAIFQPLLGHEEASLATMQALIAALAAGGYSRDLLYRDAKSHHEYVLLRYWKSEEARRAALEDPEVLRCWAKLSHEIRTLKIYETLEEALSR
Ga0210396_1000003188F012246AGGAGMKSNSRLALSPISKSRTILAIALSISLIATGCSAQWISVALADLPVLIQMALNIGTIVTTLQSGQQINAAEAAAIQNISAQASKDLNLLATLYNEYKTNPSAGTLQKIQGVIADIDQNLPALLQAAHIGNPVLSARVTAGVNLILTTVASFAALMPQTSALSASQKVAHSVRAIPKASDLKKQWNQQVCGPAGNSPLDFGTTGCTVR
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