 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021180 Open in IMG/M |
| Scaffold ID | Ga0210396_10009804 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9032 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001596 | Metagenome / Metatranscriptome | 666 | Y |
| F006278 | Metagenome / Metatranscriptome | 377 | Y |
| F006399 | Metagenome / Metatranscriptome | 374 | Y |
| F036885 | Metagenome | 169 | Y |
| F038890 | Metagenome | 165 | Y |
| F105952 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210396_1000980410 | F036885 | N/A | MTDKKDRERVIAEITLSHLIRLGNEQGCPVSRQQALAFLNQEGQAFEMWKHMMQAAEEFIEGSLLQHPFRSGGHNGFASRPRQVRSVGNAAL |
| Ga0210396_1000980412 | F038890 | GGAG | MFRITSESCHAFTLAEVLILAAMNVESVRLNSEGRVGANGARGQSKYARHVVRTDVPKVPQL |
| Ga0210396_100098043 | F105952 | GGAGG | VSTRRGAANTKRADSTGTSAGQVSRERLGSTVTVVAIEQALADLGLQARLSEIVAKAQSIENGIMQSRSRRKREHAC |
| Ga0210396_100098046 | F006399 | GGAGG | MATLALNSRIQSLVTEYRVFWQFWPQFEQTHGERRLIGFEVELIGSHTSDLNHVDPACPRCRNVRAVLLSIANLVPADLALDPDSLRYNIDSHSGAILCLPALGNRSAVWVSVYLSWSRSSGQSFETDLLTEVRALLNKWGIHQR |
| Ga0210396_100098047 | F006278 | GAGG | MFRAEILWLASGPTLKLEGKLVADWAEQAKCLVTKDVLPKGLLVDLTEVSYVHSAGEQLLNWLASVGAVFIASSVYAFAICDRLRLPLMQRIVERRKRRQKRGRERSSIKHSHPVEAV |
| Ga0210396_100098048 | F001596 | AGGAG | MSWFHSSTAPVDARDHASPAEVVACFQDQGNVLSQLAFLITGDRATADQAVVEACEITLQGNSPFRDWLFEWAKAATIASAISHGTKAIRICEATYNDRRCPHVEHLSQGDVEERAARLDLILGADAQTLLAELDPLCRAVLVLRLAIRSSIQDCALRLNVSRAAVLAANCRALTWLHGGHARPVEENHDASRAV |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |