NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10096314

Scaffold Ga0210396_10096314


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10096314 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2679
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025333Metagenome / Metatranscriptome202Y
F063887Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_100963141F025333N/AEVLRLRKLRNVALRARALAKILDSDSQEQSVFARSAVICWTIARVASGRLRAHPYLSYQQGPSRMRDVADGLLASLVAMNARRRNRTVNVYARQLQTVVQEVDDVRALTWSAELSDALGRMQIQLRRLAHEFDLDALGESGAAMLPRAKAVACAANSNSLREITADNAWPYLAI
Ga0210396_100963143F063887GAGGMEEKRAIASEIALQTQVLKTCPIHRQIYFDDDADAASAFALAIELVRKHKPYVEEFHDEHELMDLLSDTLGATPLCCPECQSIGVLSSLPDRGRLVESALEIR
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