NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210388_10000305

Scaffold Ga0210388_10000305


Overview

Basic Information
Taxon OID3300021181 Open in IMG/M
Scaffold IDGa0210388_10000305 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42656
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (89.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017745Metagenome / Metatranscriptome239Y
F032360Metagenome / Metatranscriptome180Y
F084518Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210388_1000030511F084518AGTAGMNTYTIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTTDKTDTAESTPSSTTNG
Ga0210388_1000030519F032360AGGCGGMALAAAASCSVAADGSVFGLQRKNNPFPTPPASAETQNPAEAQADNSNPQKAKRVALQQNEKEFRAGVNRLYQLAGELKEEVDKTVTTEVFSVQMYKKTGEIEKVAKMLKGKAKG
Ga0210388_1000030531F017745AGGAGMPIDDVAISYDIKFEKDHASVKVTYEISVPVGGAALIADFQVTVDGTDLISGFLPGQTAFDGAKFHTLSDPSKDASVSFTLSSNQGWVASDDDVLRGEKDYDEAEFSN
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