NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210388_10008780

Scaffold Ga0210388_10008780


Overview

Basic Information
Taxon OID3300021181 Open in IMG/M
Scaffold IDGa0210388_10008780 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7996
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000072Metagenome / Metatranscriptome2651Y
F002000Metagenome / Metatranscriptome606Y
F024597Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0210388_1000878012F024597GGAGMNTLELCAGVQLGLAFGLAALLWPDKFMPLFDILMFPWAASCRGIRANGVAAIGLALLLLVMRLNGNR
Ga0210388_100087803F000072GGAMNVERIIDDIEQLQEMFEAPDIRPLSATDITAANRRHDEMLAHSPWFRLWQEFGLCCRSESERGPRIQS
Ga0210388_100087809F002000AGGCGGMTSHLQLINSYLEVHDYAKALVKTREGIKELHALATSLTGLPSIGMTVPEDGAVVVPHGSTVVSHEDVNVDVDSDEVQSVEKGEIRAGFGHENPKTK
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