NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196959_10000332

Scaffold Ga0196959_10000332


Overview

Basic Information
Taxon OID3300021184 Open in IMG/M
Scaffold IDGa0196959_10000332 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5576
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3049Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004425Metagenome438Y
F007281Metagenome / Metatranscriptome354Y
F051754Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0196959_100003323F004425AGGGGGVNFAQLLPAIRELYSRRPEYLDYEAWELLHVLCSLNYTDDLAGEAEIAAAVEVARGDYSQWRAA
Ga0196959_100003326F051754AGGVSERHIDAEGERRLTEAGFVPVESHIGKLRWRDPEDGRVMPGGAALDKVERREEQELEDEGWERVELEGTMVFWRRPNTGHLYPRGAAYDVHKRGDKG
Ga0196959_100003329F007281AGTAGGLSMTEQYYALCVEEEDGSTEIAFFELRREALPGALGISLYTSPDGELQRRHLQGNDHVVIVAKSPRDLLEAMNTGVPSSVFVDAERIAGSVFKAMLEEELGFSLRQPRIVRLDEPDLH
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