NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10000442

Scaffold Ga0206682_10000442


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10000442 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45187
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (13.51%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052885Metagenome / Metatranscriptome142N
F056904Metagenome / Metatranscriptome137N
F057512Metagenome / Metatranscriptome136N
F061979Metagenome / Metatranscriptome131N
F098059Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0206682_1000044211F061979AGGAMILNPFELSDTELDIQVRSGVLLEALGPEIWVYPNKYRPYLVRYILYLYDKGSELRRYFPDIAERKKVCAELAGFDLTNKVHQDKAEEFYVLAHKSSRLSMITFVKYQNNVIYGLYWSNIEHLWKLISDVSKQFKEFSNDKAYLEGQKIKSQMLELAEETLGRIKKHELELFQGDDLAKELTAKTRQGSFPEDVAKLGDVY
Ga0206682_1000044221F052885N/AMRNSDYNNYPEWMKKPFTEKVIYTYADIKKDPDNPGRYIIPASYQFKLRDQIVVTDEDGTNPRPIHIAYTKGTNADGSLMIGYDLFFSEDNFGRIVLDPKRASDHSKFMFMEYSNMNGSNPNRDESVKIIWTKQDLEVKAKASRVDRKARKEAMLEAAQLSPYMVEVLIDVLGSTSDKEKSEEEKRDYIEDIAETDPKIFLAAVKSTLSEIISTTKKAKDLGIIKNDFKKQAFISQPDEEVIFSTKGLDKKKTYELFAKFLQENPKVLKTIESKVLMEQELV
Ga0206682_1000044229F057512N/AMITIAKLSEQISRIYARYIDKENPNTIVDKREIKLLVVDAIHTILGSKLAAQSAKGFVDIPEALIATYENISVDNASSVYTCTLPAQPIAAAGDMGIYEVFSDELNPFIPIPKQIMKVMQGTDLAVLESKVGYFRSANNKIRFTTDPTVSTITMRLIINDISKYSDTDILPLPADYNLGVIELVLKTLGLGVGAIQEFNVEQAQENAD
Ga0206682_1000044230F098059N/AMQTKTLNQIVRNEIVNSQLTLHNYVPFLFYAIQEVKKLSDVFDFNKAESELTITGRTAPLPANYRRVVAVSKIEGERLLPLPYDHQMNTDGVEYVTPDTNGYFGPSIVSDDNLYYTINETTNKIILSTEAGSNKHRLMLTYEPPLFSTSGNTLIPIIFERVIQMSIRLQRAKNSRAERGDVNRVNEILVVEKEYNNAKRILKTHLNPFTWEDIMMVTRKSIHRSIKN
Ga0206682_100004427F056904N/AMKQPSSPYNYLAVKVDSFFNDEIKSQTLDLKIRTDLRPTHHTRIYGKVVALPRKYKDDVLPDGEVLWSSEGIESFYSLGDKVYFHYNCVLDKGKQISDDTFLIPARRIFLRVECDNIIMSPGFSLGHKKYNDNVEEIELDGKKTMAEISEETGIVIDIFPKPMPNILVIDHSSKNERLGVMCHMLDDSNMEIEIEDNNYYLLEDRDIIGMYK
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