NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10004029

Scaffold Ga0206682_10004029


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10004029 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12186
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (6.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007114Metagenome / Metatranscriptome357Y
F011526Metagenome / Metatranscriptome290Y
F018086Metagenome / Metatranscriptome237Y
F047678Metagenome / Metatranscriptome149N
F063092Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0206682_1000402912F047678N/AMRTYTEKQLEQISGAIITCFVNLHFLQEADSSGLFRQRIKNNVRKTMSDLIDIENSYFSKIEEVDEKELGDKLVANKLEFIEWLLNKFDFNDFSKLQEVCIAYSFNTKELTETSDRILTENGAKTIE
Ga0206682_1000402924F018086N/AMSANKSYLLGDVELPIATIKSLSQYFEDVLTYNAKRELVAKKDENGKAIKKLKLNFSIFEEGNFGQNVSFTIPQSKEQRDNGDKKKYVANGKIYYASDDLKSFVQKSEKKEKQQATELVTDDLPF
Ga0206682_1000402929F007114N/AMINTEAWDKLKNQIEYHLKQDNNLTDIRINYQVKIPERGTRNYLGLSVKINE
Ga0206682_100040293F011526N/AMRNEDMIATVECYIHHLKDEEVRIAKPKNHHQFYLLSLAYEKCKDFFIKH
Ga0206682_100040296F063092N/AMTEDKIIWNGVKERMTSTMSNKDFKIMCKLHSKHFNHKYSEPCTCNKRMLRRWIEELNDKLV
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