NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10037698

Scaffold Ga0206682_10037698


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10037698 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2783
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006815Metagenome / Metatranscriptome364Y
F018209Metagenome / Metatranscriptome236Y
F018560Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0206682_1003769810F006815N/AMATNFSQETAQTKFDEYTYRIEALCNKIEELKAKIEVSQINKQNG
Ga0206682_100376986F018560N/AMENTKCIAVRKDYYLLIVNDISLGEFERSDLRNIIEVIDNAI
Ga0206682_100376989F018209N/AMRTQKHDLKDEIKYLEYALYQAEQDQDAITVLAITEKLDILKSTLINIQ

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