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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021254 Open in IMG/M |
| Scaffold ID | Ga0223824_10002496 Open in IMG/M |
| Source Dataset Name | Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20965 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (93.62%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | New Zealand | |||||||
| Coordinates | Lat. (o) | -42.26 | Long. (o) | 171.6 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012184 | Metagenome / Metatranscriptome | 282 | Y |
| F065312 | Metagenome / Metatranscriptome | 127 | Y |
| F086398 | Metagenome / Metatranscriptome | 110 | Y |
| F087968 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0223824_1000249617 | F087968 | GAGG | MIKVTKTHARTLYNAGKEIMIIPNKMRTDSFMASWTTKPANDPDADFDKLCNAISYYNCSPETGLSLAYYVKAL |
| Ga0223824_1000249619 | F086398 | AGGGGG | MEMTYHVKVQRAERVKNIVEKIGMGQVIKEKYVRYELGQAGKYICITDTGVTIIKSEDKLKIITMYVTTQRELVSVYGGAGKVPPFLRKKVDHNQSLFTEKGKTIWR |
| Ga0223824_1000249622 | F065312 | AGGTGG | MAKKNNKPKTWVEVFQSERKQFPSGYCVTRVIPDKRRKNPKHKGKEFDE |
| Ga0223824_1000249627 | F012184 | AGGAG | MTINELKTILSGIEGAQNARANKTNFIVVPCEDGIVKVNMQVALAKDTKNHTAFNMEAAVAEYKAWEAESALKAAERAARPKALKGPNPEAQARRDELDAKIAALPAFTEYTATDIRNALGNTVADNVLVMQVGSAAKRLVEKGVLATSTREGDKKTYYTKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |