NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0223825_10164426

Scaffold Ga0223825_10164426


Overview

Basic Information
Taxon OID3300021255 Open in IMG/M
Scaffold IDGa0223825_10164426 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)104698
Total Scaffold Genes189 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (19.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location NameNew Zealand
CoordinatesLat. (o)-42.26Long. (o)171.6Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027710Metagenome / Metatranscriptome193Y
F066344Metagenome / Metatranscriptome126Y
F072887Metagenome / Metatranscriptome121Y
F082004Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0223825_10164426135F072887N/AMEKCMRCEHDLILEGNFMLSEINGEDLSEEDDAMVTYAHCPYCGARYELTDTPESEKRNYPYWCKDL
Ga0223825_10164426169F082004N/AMIIHLNLTEDHLKLVRFLNIEDKDDDVLTINKKVMLTMQTHILDDVAMILGLRDKAIKNTEEDADGAAYPDDVEQYMLDTYNYVSENLYLIETLLHQKVFEGIKPGHYKAKDNEMVWEFC
Ga0223825_1016442675F066344N/AMGKFLQMMSQNDSKALVARASQINTQAKIAQEEIIHKLKIEKTNVEMQIQGLTDFAPDTTDSLRPGVKGWNPTKWAADLQDAKTRLYELNVELKIAQATFDEFFDDDEETADAD
Ga0223825_1016442688F027710N/AMHQLMEKNKLYVLIDKTLKPVYGCVQGGHAVAQWMLEHKNTHLWDNEYLIYLRADIIKWRRKLDLLGVDYSEFREPDLDDRITAIAVHGHEELFKNLDIVTED
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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