NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0223825_11270398

Scaffold Ga0223825_11270398


Overview

Basic Information
Taxon OID3300021255 Open in IMG/M
Scaffold IDGa0223825_11270398 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1814
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location NameNew Zealand
CoordinatesLat. (o)-42.26Long. (o)171.6Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013263Metagenome272Y
F088017Metagenome109Y
F096242Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0223825_112703982F096242N/AMLLKLIKTRQYISGSHCEVWEINHETGNRLLGEVFVLNEHLPLELIYRVTVSVRGICIQGRHCGWQWECERREQAVTEYLKVVQECREEIRIEVCEPEPVLPGYPEVDYHPGDFGEEFTPIIVPLNEDFDE
Ga0223825_112703984F088017GGAGMKRDSFEVIWEFLAPDEQQFGNRKEACRRLWSGLSVPKQRQIYATFVWQREQRIEIEENPYFAISHCNPRPFNYNGSNVGLPNDTKLFIAKYGEHYGVYSKLDTEAFEMVDKKAFN
Ga0223825_112703985F013263N/AMSDGIGRKKRRIMKANNLKELRELRNQEKAIKARIDEISTEATNEAVAILAAKGLEKGEFEVEGVGRFQLQRTESFDFSDYRRYPQEQAVKWRENAKEKTKEQNLVKARTAVMARYVKTFVELYPDKEPDEIKLTVKVIE
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