Basic Information | |
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Taxon OID | 3300021255 Open in IMG/M |
Scaffold ID | Ga0223825_11392419 Open in IMG/M |
Source Dataset Name | Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 125900 |
Total Scaffold Genes | 171 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 139 (81.29%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | New Zealand | |||||||
Coordinates | Lat. (o) | -42.26 | Long. (o) | 171.6 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F041054 | Metagenome / Metatranscriptome | 160 | Y |
F052997 | Metagenome / Metatranscriptome | 141 | Y |
F084920 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0223825_1139241980 | F084920 | GAGG | MDKEFGLQELYFVQLKSTYPIEIKGKQIAAGEVIAAFDKILIANFHEIHKEASAQGGYQNRKLVVWNKTEGVDLVFTQGVFSKTQLALMNNMRLISLKDNQIVRIAQRDELETNDEGKITLTHVPIDSWIFVYNKETGEKLTGLTFVDQQTLQTPLIYKDVIVDYEYAYDNGADVSFVGEDIFENYVSLEGRTRFKDDITGETHTAIIYIPKLKITSGFNLTLGKKAQPVVGQFSATAFSTGARKQSKALEIYFLDDDIDKDSEWR |
Ga0223825_1139241983 | F041054 | GGGGG | MGVRNCSDIGVNAQYIVKRLMANQNLLKLLYYTDKDPLSHEDLTQEQIQNEIFEKLIKIVPRVGPKETAHSIVAIRISRGRGLVTNSEFKSVIVNVETFVPMTQWIIKGTNLRPFAIMGEIQKSLNDKKIEGLGKLTGGDFDLNFLTEEISDYEQTFTLTSYD |
Ga0223825_1139241984 | F052997 | AGGAGG | MGYYEDIYLKRLNRYGIDFQSRMQGQREENFRRQLMKSVYYVKFQYGDEMCEGELTPMRQNETKTMQYLLTNVHLDMPSGTLLFIPDKNNELQPWLIYYLEDMKASGYNRYIVLKMTHMLSWKDRQGTLQTSWAYFYGQEDNMLKDELKSRSRSKVLYTENLKLSFFIMPLNENIRKDDYLEVNAGKKLESIKEAYVVTGYDTQSTPGVEFVSVDPQYIRDLTPPPKKQEGDSDDDFFWINGGVE |
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