NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0223825_12324983

Scaffold Ga0223825_12324983


Overview

Basic Information
Taxon OID3300021255 Open in IMG/M
Scaffold IDGa0223825_12324983 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)32544
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (22.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location NameNew Zealand
CoordinatesLat. (o)-42.26Long. (o)171.6Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051210Metagenome / Metatranscriptome144Y
F071326Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0223825_1232498319F051210N/AMDNKFYLSMMQQPAMMEALTNSSRSVEDATIRSREYAKMFSRNDELKEMFGINNNPSLVQKTFSGYAETPLLSTQYFNASVASYVSSFAGFMSIERDFDQPNGLFYWFDVLGVSDMRSVIPNLGPDNLDIQAFGNFDLEITPTANTDYSALVGRKIIPGTVRVKITSATDSFELVDNGQGNFMSVAGKISTGTINYLNGRIEFALVTALTGDPTKESILVVGKEDTTGTPCNTTGASNAHANDKRFIAKMQQIGLATVPDLLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKLINSKLVKTLEEGYVGNTMTDLDLSATSTGIESKFHDYRSRVDIFDSYLINVESALATKAVKGVVTTAYVAGNQASNQFQKGGMIGKFEKNTKMTYINDLLGWYNGVPVLRSTDIDESTPGEATFYAIHKTADGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVKYMAPELVQKVTFKYGI
Ga0223825_123249832F071326GAGMNNAEDMASKMLEKANKLYSIGMKNMALQMKLLGTDFVVLRPKDNSKWKNVFGGSFSSDSTLENDYDQFTTRLIINMNDLRDVWNRNRDTIESYSPDGSLMVGDELQYTRNKRTYRFKISMKQGFSEDATTLFVYTLSSIIETLDE

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