NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213904_100067

Scaffold Ga0213904_100067


Overview

Basic Information
Taxon OID3300021262 Open in IMG/M
Scaffold IDGa0213904_100067 Open in IMG/M
Source Dataset NameSwitchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Shaw_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2456
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)38.083Long. (o)-81.98Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y

Sequences

Protein IDFamilyRBSSequence
Ga0213904_1000673F002324GGAGGMGEIKLFQICYEGELTVDVSHAMRRLGAEPNFDQSWQVWLHESRHAAPIVRWMRSHIADDARLLVATTQFSTTRDFLLIRHSLTPGADYRELHDAIERLGIVVELPFESTFVVRSSDSTHPAIDVQTLGRALGELCPDESLMVTGVSHDWAFCNSGVSRMYVADEGEQRILLRSF
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