NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214544_1000661

Scaffold Ga0214544_1000661


Overview

Basic Information
Taxon OID3300021320 Open in IMG/M
Scaffold IDGa0214544_1000661 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65712
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (48.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005662Metagenome393Y
F026490Metagenome197Y
F091448Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0214544_100066113F026490AGGAMEDTKKEMKCSRNEDKTMKCSQQRRFLVKMKSKSGALVWKVARGDKGEG
Ga0214544_100066115F005662AGGMCLVVGHMMGMELVEFLSVTNGRGFLSMVIACVGRTMGKELLCSRRLLLGEESIVW
Ga0214544_100066129F091448N/AVKYLLKTCARFTRGKANLEVVLSSQNCVFGKAGLGYTPIHEKKAKKFSSFFSKSEPNVMSFIFCNYCMKKGHVLKNFYVRKYDVPKGFINWIQIESRKGTM
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