NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214544_1001905

Scaffold Ga0214544_1001905


Overview

Basic Information
Taxon OID3300021320 Open in IMG/M
Scaffold IDGa0214544_1001905 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43898
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (52.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042760Metagenome157Y
F052412Metagenome142Y
F060642Metagenome132Y
F079666Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0214544_100190528F052412N/AMRRSHDGQGTIMFSSAAIGRGVHSMVIACVLGSERGRLGCFATGEESVGQDYEQDRLVESDHERDNFVGAQ
Ga0214544_10019053F079666GGAMKNKDKDDGIEDSPLDMLLVILLEGASMEVSWLVKPSSSSPSWREFDHEFLNPTSKGERSQILNELLIL
Ga0214544_100190531F060642N/ALLFQNRFIIGYLNIIVQLIIVVDLQINQCKVSINLLAFSLLTKVQSQLKVRTFRLSTVNSTKVQSQSNFTMPNHVYSFISSPNKKLNQSKASINFR
Ga0214544_100190534F042760N/AMRKGTKMKDDLIEKVEITKNSFDIINDSVREEPQIPEIVENDEISINYVMNHIIWNQNEVNIDKTYI
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