NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214544_1007280

Scaffold Ga0214544_1007280


Overview

Basic Information
Taxon OID3300021320 Open in IMG/M
Scaffold IDGa0214544_1007280 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19562
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041614Metagenome159Y
F073155Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0214544_10072804F041614N/AMLRDASKNNFIKLLVTFNTTLQPHQRFPEHPNFNALRHKIKDMLLKLAIRAEQMFEDLSQLMNDTVRKVTLEDMMNMMTEMMKMNQTDQKEMMNAATQSLQNQSEKLIAESHHTDISTNRPNDTNSNMPTDGHINFAKDVADEEIKDSHINIATDGYVDDAQCEYKVVPVDEDMSTNDHFQEQSCENNTIEEPNAVEEPTIFEDAAEASTIATDLVNDEAVESTTPGENFCSEDEIMRIIDDLLNHPNAPDNAQDELKPHTPHIKFVDVNDVNKFLVVIFVDMAVEKE
Ga0214544_10072806F073155N/AMIKILTVFPENGAKFDNAVIDAIKLILLNYSNFSIAKIIVKKIEWVK

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