NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214544_1008677

Scaffold Ga0214544_1008677


Overview

Basic Information
Taxon OID3300021320 Open in IMG/M
Scaffold IDGa0214544_1008677 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16650
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (21.05%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039014Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0214544_100867712F039014N/AMETYKKMERKLIDITLPRMEDKPKSLNTHSDKGPLTKLRDS
Ga0214544_100867714F039014GGAMERKLIDITLPRMEDKPKSLNTHSDKGPLTKLSDS
Ga0214544_100867716F039014N/AMETYKKMERKLIDITLPKMPDKPKSLHTHSYKGPLTKLRDS
Ga0214544_10086774F039014N/AMETHKKMERKVIDITVPRMEDKPKTSSRQKDKGPLIKLRDS
Ga0214544_10086776F039014N/AMETHKKMERKLIDITVPRMEDKPKTSSRQRDKGPLIKLWDS
Ga0214544_10086779F039014N/AMETYKKMERKLIDIELPRMEDKPKSLNPHSDKGPLTKLRDS
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