Basic Information | |
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Taxon OID | 3300021320 Open in IMG/M |
Scaffold ID | Ga0214544_1009798 Open in IMG/M |
Source Dataset Name | Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14684 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (84.62%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 34.06 | Long. (o) | -118.44 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007299 | Metagenome | 353 | Y |
F019604 | Metagenome | 228 | Y |
F046862 | Metagenome | 150 | Y |
F046863 | Metagenome | 150 | Y |
F046864 | Metagenome | 150 | Y |
F089948 | Metagenome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214544_100979814 | F046862 | GGA | VRGGNDDIESIEGRTAQQDVIGCWCVDDKEADWDGFSLGPLLKDGVEVNVALGGYLFTGKAIYWLVIWDHGGVRKLKFLVGGPVEDINGAALINEDFFDSVIFDFNGDNNGVILLMVEAMKVIIYKNDGRHTASVVGMGDVVHRLDMAEVSFFGRGSGSSTSKATRDGVNGAT |
Ga0214544_100979816 | F089948 | GGTGG | LVISALGGVVVLRGGGIRSACRASSRMRKRATIRGVYLVKRGWRGSRGRVLGCGLGCGVGLAVVVA |
Ga0214544_100979820 | F046863 | AGG | MGDVDFKVLVRVGFASIAIQGERFSLGRKRGVGDKVSEGVTTSGLVGREQVRWDGMVDHSREGGGEVVRGDVGSRKVLWVVWWNTGGV |
Ga0214544_100979821 | F046864 | AGG | VGLYSISSSVGWKAGDFAASEVSLAFPFRMGSASILRLRREFSCHNASISSTLRFFKSVSSCCIFAWPSRMAARSRVMPGGPKGPASTCLFTPALLWVETIFKEKQVLKVFVSCTTVGANCSCREQIR |
Ga0214544_10097983 | F019604 | AGGAG | LNPDGSTKFPFSWTSNPSWYKDMGMDELSAGDKEVVEILLKFVDKLPTKGLVRVYNSVHPIIDIEGIYLLLKLC |
Ga0214544_10097984 | F007299 | GGAGG | VHGGTKRKAELPPRPGKGKDVKKVRAILLETGSASGARSASGEKGPKSRLIELPEISMRKDISITLPDTIVNSIDGMDADHLVRTMVEFGSKALVLSRRVGSLYKREVKEGGREKVEELQGKVDKLEEEKAALEKAKES |
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