NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214544_1020269

Scaffold Ga0214544_1020269


Overview

Basic Information
Taxon OID3300021320 Open in IMG/M
Scaffold IDGa0214544_1020269 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4775
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002932Metagenome519Y
F007068Metagenome358Y
F039014Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0214544_10202692F039014GAGMETHKKMERKLIDITLPRMEDKPKSLNTQKDKGTSIKLWDS
Ga0214544_10202694F039014GAGMETYKKMEWKLIDITLSRMEDKPKSLNTQRDKGTLIKLKDS
Ga0214544_10202696F007068N/AMEVDYTRCLTEGHPCLVAFDYEIKNNVVSQRFMETLQLPTTFHLNQAWIKFSTSQCLKEVLWDIAPMDSCHLLFKTLLLDERSLYLRYEGHQKK
Ga0214544_10202697F002932N/AMHELFIVTYQGGPLLPRNVIDGLQPLESNKYQVEFDPGRRELVSTCEKIKVLHKIIINLH
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