NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214544_1021842

Scaffold Ga0214544_1021842


Overview

Basic Information
Taxon OID3300021320 Open in IMG/M
Scaffold IDGa0214544_1021842 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4051
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006835Metagenome363Y
F008539Metagenome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0214544_10218421F008539N/ALSDSRIHEFNQRSFILLCVSTLRLIFHSSKCDVYQFSFYLLLCFHLLVLNNFSNYLLVSIPTMIDLSNKSNLVHSHHLVFRGWLSRFGIGKEVYYTKCLTEGHPCLIAFDYGSENNVVSQRLVDKLQLPATFHLDQA
Ga0214544_10218423F008539N/ALSDSRFHEFNQRSFIPLCVSTLRLIFHSWKCDDQFPFYLLLCFHFLVLNNFSNILLFRIPTMIDQSNESNPVDSHHLVLRSWLSRFGIGKEVYYTKCLTEGHPCLVAFDYGTENNVVNQRLVEKLQLPATFHLDQAWIKFSTWQCVK
Ga0214544_10218426F006835N/AVDSHHLVFRGWLSRFGIGKEVYYTKCLTEGHPCLVAFDYGSENNVVSQRLVE
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