NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214544_1029014

Scaffold Ga0214544_1029014


Overview

Basic Information
Taxon OID3300021320 Open in IMG/M
Scaffold IDGa0214544_1029014 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2090
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000010Metagenome7424Y
F000029Metagenome5053Y
F028434Metagenome191N
F089946Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0214544_10290141F000029N/ANNVVSQRLVEKLKLPTSFHSNQARIKFGTGQCVKEVLCDIAPTNSCHHLLRWAWLHFKTLNLDERSLCLRHEGHEMKLKFIAPRQAKKDQYTVKEKIEKERIEKEEI
Ga0214544_10290142F028434N/AMEKVVEYKVFNRKPPMFSCIRLPQRQQCCKPKIGGETQVTNNLSSKSSKDQIQYMTMCARSIM
Ga0214544_10290143F000010N/AVQEVLCDIAPMNSCHHLLRWAWLHFKTLNLDKRSLCLRHERHELKLKFMTPRQAKKDQHTLKEKIENERIEKEEI
Ga0214544_10290144F089946N/AMEKVVENKVLNRRPSMFSCIRLRKRQQCCKPKIGGETQVTNNLYSESSKDLIQYMTMCERSIM
Ga0214544_10290146F000010N/AVKEVLCDIAPTNSYHLLLRWAWLHFKTLNLDERSLGLRHEGHEMKLKFMTPRQAKKDQHTLKEKIEKERIEKEEI
Ga0214544_10290147F000029N/AVEKLKLPTSFHSNQARIKFGTGQCVKEVLCDIAPTNSCHHVLRWAWLHFKTLNLDKRSLCLRHEGHEMKLKFMTPRQAKKDQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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