NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214544_1029974

Scaffold Ga0214544_1029974


Overview

Basic Information
Taxon OID3300021320 Open in IMG/M
Scaffold IDGa0214544_1029974 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1945
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000029Metagenome5053Y
F000056Metagenome3057Y
F002973Metagenome516Y

Sequences

Protein IDFamilyRBSSequence
Ga0214544_10299741F002973N/ALVAFVYESEHNVVSQRLVEKLLLPRSFHPSQAGIKFIAGQCVKEVLCDISSTNSCHLLLRWAWLHFKTLNLDER
Ga0214544_10299742F000056N/AMLHLDERSLYSRHEGHEMKLKFMTPRQANKDQHRLKEKIEKERIEKEEI
Ga0214544_10299743F000029N/AVEKLLLPRSFHPSQARIKFSTGQCVKEVLCDIAPTNSCNLLLRWAWLQFKTLNLDERSLYLRHEGHEMKLKFLTPRQANKDQHTLKEKIEKEEI
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