NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214542_1005182

Scaffold Ga0214542_1005182


Overview

Basic Information
Taxon OID3300021321 Open in IMG/M
Scaffold IDGa0214542_1005182 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25074
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046862Metagenome150Y
F074464Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0214542_10051828F074464AGGLLIVGLGGVGVVMRVIWWTSVVRSRGVTGSRGGGMVVSTDEAAKVASTDQFFYFILECFAFFCSVAMVAVVTTIFGHVGVGGCGCLSWWRD
Ga0214542_10051829F046862AGGAVRGGDDCTKGIEGRTAQEDVLRCWHIDNKEADGDGFGLGSIPEDDVEVYVAPGGYMFAGKAIYWLVIWDHGSFRELEFLVSGPVEDINRAALINKDFLNSIILDFNSDDHGVILLVVEAVEVIICEYNRRHTASVVGMGDVVDGLYMAEVSFSGRRGGASACEATRDGVNGAS

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