NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214542_1041806

Scaffold Ga0214542_1041806


Overview

Basic Information
Taxon OID3300021321 Open in IMG/M
Scaffold IDGa0214542_1041806 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1124
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002527Metagenome551Y
F028433Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0214542_10418061F002527N/AMPISKEDDKSSWEQYHIILLSHIVLYRIXSLHDSNESLLVTXVSPPIFGLQHCCRFGKRMQLNMGGLRLNTLFSTTFCIVFFFTSFSFSSISLPSAVYISSFVILSFSIFSFNVCSSFLACLGVINFNIISCLLCLKQRDRS
Ga0214542_10418062F028433GGALSVLKXSHAHLKRRXQEFLFFTSFSFSSISLPSAVYISSFSILSFSIFSFNVCXSFLGCLGVINFNFISCPSCLKQRDRSSRLSVLNXSHAHLNRRXQEFVGAISHNTSFRHCHVLNLILAXFGXKVVGNLSFATNLWLTTLLSLS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.