NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214542_1044308

Scaffold Ga0214542_1044308


Overview

Basic Information
Taxon OID3300021321 Open in IMG/M
Scaffold IDGa0214542_1044308 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1009
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000010Metagenome7424Y
F000056Metagenome3057Y
F028434Metagenome191N

Sequences

Protein IDFamilyRBSSequence
Ga0214542_10443081F000056N/ALRWAWLHFKTLNLDERSLHLRHEGHEMKLKFMTPRQASKDQHTLKEKIEEERIEKEEI
Ga0214542_10443082F000010N/AVKEVLCDIPPTNSCHLLLRWAWLHFKTLNLDERSLCLRHEGHEMKIKFMTPRQAKKDQDTLEEKIEKQRIEKEEI
Ga0214542_10443083F028434N/AMQKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNNLSSESSKDQIQYMTMCERSIM
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