Basic Information | |
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Taxon OID | 3300021333 Open in IMG/M |
Scaffold ID | Ga0210324_1298241 Open in IMG/M |
Source Dataset Name | Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.191 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2972 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oregon | |||||||
Coordinates | Lat. (o) | 46.208 | Long. (o) | -123.693 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022643 | Metagenome / Metatranscriptome | 213 | Y |
F053473 | Metagenome / Metatranscriptome | 141 | N |
Protein ID | Family | RBS | Sequence |
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Ga0210324_12982412 | F053473 | AGGAGG | VKRLMVLGVISALLLCFEKLSPARKLRRVETLTTRIVTLQEVLKHHHALPPAARAFYDSLLEQGEVLAVQVEYLPDPLLWLTTTPEQARWMREQHNGAAGLESVVMSLADAHDLLAATGNEIPPTLHGVAQVLVSQAPAEV |
Ga0210324_12982415 | F022643 | N/A | LCLLSGCAFGASGNTSALREPGFRASMVRRPALLVRVSVSDELSQRERGRIPEDYQAAVVEGLDRLGILAVDVAIVPGGRDRALSGIDRAPALSRAREAGAEHLVIVDARLSRGDLPHCKPSGRTRVGLTTYWDAGLEIDRVSDGKPLLVDPPAEDLRAVDVELDCKTGRLIRRRSMDELITDSVGLILAPFGSR |
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