NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210324_1298241

Scaffold Ga0210324_1298241


Overview

Basic Information
Taxon OID3300021333 Open in IMG/M
Scaffold IDGa0210324_1298241 Open in IMG/M
Source Dataset NameMetatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.191 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2972
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.208Long. (o)-123.693Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022643Metagenome / Metatranscriptome213Y
F053473Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0210324_12982412F053473AGGAGGVKRLMVLGVISALLLCFEKLSPARKLRRVETLTTRIVTLQEVLKHHHALPPAARAFYDSLLEQGEVLAVQVEYLPDPLLWLTTTPEQARWMREQHNGAAGLESVVMSLADAHDLLAATGNEIPPTLHGVAQVLVSQAPAEV
Ga0210324_12982415F022643N/ALCLLSGCAFGASGNTSALREPGFRASMVRRPALLVRVSVSDELSQRERGRIPEDYQAAVVEGLDRLGILAVDVAIVPGGRDRALSGIDRAPALSRAREAGAEHLVIVDARLSRGDLPHCKPSGRTRVGLTTYWDAGLEIDRVSDGKPLLVDPPAEDLRAVDVELDCKTGRLIRRRSMDELITDSVGLILAPFGSR
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