Scaffold Ga0206696_1611970

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206696_1611970

Scaffold Ga0206696_1611970

Overview

Basic Information
Taxon OID	3300021334 Open in IMG/M
Scaffold ID	Ga0206696_1611970 Open in IMG/M
Source Dataset Name	Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	736
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.6907	Long. (^o)	-122.3448	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003733	Metagenome / Metatranscriptome	471	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206696_16119701	F003733	AGGA	MKALRTQICTYAIALLGSIGFASQSLAGSSDFSGIWIAGHAEMNVVAIPGTHTAGATGSDASGGTQNAEVTEGTIGGFSPTAGYEVGFNLPLGDTFFITVGYADGGGKTADIVKVDDANGTSDVSLLASNPDWFYIAPSISIFDNSAVYFKLGKSHVNLEVVGDVTGAVSGMNGDMYGIGTTSIASNGLFFKTEAGAVLYDEFKVTGIGGDANTTVEGEPVVGYGHISIG

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