NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1000044

Scaffold Ga0213867_1000044


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1000044 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56246
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (61.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028966Metagenome190N
F034000Metagenome176Y
F044811Metagenome154N
F058936Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100004425F034000N/AMNRQQQLAALAAQLHELTTEEEREDYPFFDHLHDLIYDLGVEEGE
Ga0213867_100004450F028966AGGAGMSAYAFVNYIRFKTQADAYTGTPYQNFSINESRTYSGVTYSFAPFAISSGGGARGGERSSASLVAGTDAISVNLFAEAVQNRYMLEIKTVSLDPLTFADEALAASEIWRVASYDMDTSRVVLKLTSPLDAVKAQVPRRTLSTALVGALPTSGALVVS
Ga0213867_100004451F044811GGTGGMWHQWIGLPHKFRADPRKGIGADCLIMVWNVLEDAGAPHPRLDPTWLDLAESGRHRLLARVYEQLTIPLDAPEEYAVTLFSTERTIGIGVVVDGGLLHVHHRRGVQWMPLDRCKPLEFRKFK
Ga0213867_100004488F058936GAGGMIMTTATAVLATVPASFRGKRRAAGGAEQQLRNLEQQSSCFTAKQLAYGVLYADATGRITGTISMALRRATAWQAAQLIAAMHKDGLTLISEVASWLNANAMAVLA
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