NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1000840

Scaffold Ga0213867_1000840


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1000840 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13714
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (27.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006322Metagenome / Metatranscriptome376Y
F010877Metagenome / Metatranscriptome298Y
F026712Metagenome / Metatranscriptome197Y
F030556Metagenome / Metatranscriptome185Y
F035552Metagenome172N
F059466Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100084010F030556N/AMANDKVFVGKTNVVNTKYGQIVKVALGPQDFEVLQNNKNDKGWVNLEIKDKRDGGKYIQLQGEMKPKAVGVNDTDDGMPF
Ga0213867_100084017F035552GGAGMNIKDDLLLRADLDTLYGALGMLAEKCKEDDELIKVLLHFEQFVEIHKTRTRDMVTYRDTIEKARNEYRSLKLKYDGTKDLLNQTRDMLHKVMNQKIDDNVDNQF
Ga0213867_100084023F026712N/AMKANFYPTDSEQETLMDLVIRELYLRGQSMDNYNVQEVAYRQAISDGAMRTDNYFV
Ga0213867_100084031F010877N/AMTRKSLIIALVGSGLPKGELKEEMFAFHNSMVGKSQYFKKQENPKTACGSCIQRVKTAVFKWYHYDDKAPNYKELEFTGKLGAHNIPLYKLI
Ga0213867_100084032F006322AGGMGVKRNRKGDIVLGPGSELTELQSAFLERVKSEGIEEGGKIAKSLGYTNYYRDRRTEGTAFYREIMKFVESEAKSIEAAKGTNLSKLISIRDAALANGDMKVAMEAIKIINDMQGYKAPTKIEQTKLDITATIDLTAPKEEEQGYIDLD
Ga0213867_10008409F059466N/AMWKDVKNELPTNTFECVVKMWNQFNDTWVTGIGIYDIPTKQWEVSSNIGEQYPVHFWFQTPELIEVK
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